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Troubleshooting HPLC Made Simple

💡 HPLC Troubleshooting: Point-by-Point Guide

1. ❌ No Peak in Chromatogram


• Check injection volume – Was the sample injected correctly?

• Verify sample preparation – Ensure correct solvent and concentration.

• Inspect flow rate – Ensure mobile phase is flowing at correct rate.

• Confirm detector settings – Wavelength, range, and mode should match the compound.

2. 📉 Peak Area Too Low

• Sample might be diluted.

• Possible sample degradation before injection.

• Incorrect injection volume (too small).

3. 📈 Peak Area Too High

• Sample over-concentrated.

• Injection volume too high.

• Integration error in software (baseline not properly set).

4. 📊 Baseline Noise

• Caused by air bubbles in the system.

• Detector lamp aging (especially UV lamps).

• Contaminated mobile phase or solvents.

5. 📉 Baseline Drift

• Temperature fluctuations during run.

• Mismatch between sample and mobile phase.

• Detector instability or warm-up issues.


6. 👻 Ghost Peaks (Unexpected Peaks)

• Mobile phase contamination (use fresh solvents).

• Sample carryover from previous runs.

• Dirty injector or loop (perform cleaning).

7. 🔀 Split Peaks

• Incomplete sample dissolution.

• Column overload or partial blockage.

• Inappropriate solvent compatibility.

8. 🌀 Broad Peaks

• Aged or damaged column.

• Poor sample solubility.

• Flow rate too slow.

9. 🔻 Tailing Peaks

• Problem with column integrity or packing.

• Sample solvent mismatch with mobile phase.

• Residual silanol activity (use end-capped columns or buffer).

10. 🔺 Fronting Peaks

• Column overloading.

• Too high injection volume.

• Highly concentrated sample.

11. ⏱ Retention Time Shift

• Mobile phase composition changed.

• Flow rate adjustments during run.

• Temperature variations.

12. 🔄 Variable Retention Time

• Mobile phase not mixed consistently.

• Pump inconsistencies or mechanical issues.


13. 🚨 High Backpressure

• Blocked column, frit, or inline filter.

• Viscous mobile phase or buffer precipitation.

• Tubing clogged or narrowed.

14. ⚠️ Low Backpressure

• Leak in system (fittings, pump, or injector).

• Column not properly installed or frit missing.

15. 💧 Leaks in System

• Check pump head, injector, and tubing connections.

• Tighten any loose fittings.

16. 🌫 Air Bubbles in System

• Degas mobile phase (ultrasonic or vacuum).

• Prime the pump before use.

17. 🔊 Noisy UV Detector

• Air in flow cell – degas mobile phase.

• Dirty or old UV lamp – check lamp age/hours.

• Unstable electrical power supply.

18. 🔁 Non-Reproducible Peaks

• Inconsistent injection volumes.

• Errors in sample preparation or handling.

• Syringe or injector malfunction.

19. 👯 Double Peaks

• Presence of isomers or closely related compounds.

• Column not efficient – check particle size and type.

20. 📉📈 Fluctuating System Pressure

• Air bubbles in pump head.

• Leaks in suction line or fittings.

• Mobile phase degassing insufficient.

Written by Pasupuleti

Empowering Aspirations: Your Ultimate Guide to Career and Academic Excellence.

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